Cellocity
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Contents:
Introduction to Cellocity
Cellocity Tutorial
Validation of the Cellocity Software
Developer Information
The Cellocity API Reference
Cellocity
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Welcome to Cellocity’s documentation!
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Welcome to Cellocity’s documentation!
¶
Contents:
Introduction to Cellocity
A 30 second pitch
Installing Cellocity
Citing Cellocity
Cellocity development history
Cellocity backbone
Cellocity architecture
Examples of algorithms and vector field quantifications implemented
Examples
Support
References
Cellocity Tutorial
Step-by-step guide
Load a file and create a
Channel
object
Preprocess
Channel
object
Prepare for Analysis by creating an
Analyzer
object
Extract data by creating an
Analysis
object.
Validation of the Cellocity Software
Validation dataset
Downloading the validation dataset
Performing the validation on your local installation
Process time
Analysis of flow speeds
Qualitative vector field comparison
Quantitative vector field comparison
In conclusion
References
Developer Information
Contributing to Cellocity
Bug reports and feature requests
A note on metadata and file formats
Pixel resolution in Micromanager vs ImageJ .tif files
Creating your own image format reader
Detailed description of the 5-
\({\sigma}\)
correlation length analysis algorithm
The algorithm steps:
The Cellocity API Reference
The channel module
The analysis module
The validation module
Indices and tables
¶
Index
Module Index
Search Page
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