Welcome to Cellocity’s documentation!

Contents:

• Introduction to Cellocity
  • A 30 second pitch
  • Installing Cellocity
  • Cellocity development history
  • Cellocity backbone
  • Cellocity architecture
  • Examples of algorithms implemented
  • Examples
  • References
• Cellocity Tutorial
  • Step-by-step guide
    • Load a file and create a Channel object
    • Preprocess Channel object
    • Analysis of Channel object
• Developer Information
  • A note on metadata and file formats
  • Pixel resolution Micromanager vs ImageJ .tif files
  • Creating your own image format reader.
• Validation of the cellocity software
  • References
• The cellocity API reference
  • The channel module.
  • The analysis module.
  • The validation module.

Indices and tables

• Index

• Module Index

• Search Page