Cellocity
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Contents:

  • Introduction to Cellocity
  • Cellocity Tutorial
  • Validation of the Cellocity Software
  • Developer Information
  • The Cellocity API Reference
Cellocity
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  • Welcome to Cellocity’s documentation!
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Welcome to Cellocity’s documentation!¶

Contents:

  • Introduction to Cellocity
    • A 30 second pitch
    • Installing Cellocity
    • Citing Cellocity
    • Cellocity development history
    • Cellocity backbone
    • Cellocity architecture
    • Examples of algorithms and vector field quantifications implemented
    • Examples
    • Support
    • References
  • Cellocity Tutorial
    • Step-by-step guide
      • Load a file and create a Channel object
      • Preprocess Channel object
      • Prepare for Analysis by creating an Analyzer object
      • Extract data by creating an Analysis object.
  • Validation of the Cellocity Software
    • Validation dataset
    • Downloading the validation dataset
    • Performing the validation on your local installation
    • Process time
    • Analysis of flow speeds
    • Qualitative vector field comparison
    • Quantitative vector field comparison
    • In conclusion
    • References
  • Developer Information
    • Contributing to Cellocity
    • Bug reports and feature requests
    • A note on metadata and file formats
    • Pixel resolution in Micromanager vs ImageJ .tif files
    • Creating your own image format reader
    • Detailed description of the 5-\({\sigma}\) correlation length analysis algorithm
      • The algorithm steps:
  • The Cellocity API Reference
    • The channel module
    • The analysis module
    • The validation module

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2020, Jens Eriksson Revision c37ec298.

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