Index

A

AlignmentIndexAnalysis (class in cellocity.analysis)

Analysis (class in cellocity.analysis) Analyzer (class in cellocity.analysis)

C

calculateAlignIdxs() (cellocity.analysis.AlignmentIndexAnalysis method) calculateAverage() (cellocity.analysis.AlignmentIndexAnalysis method) calculateAverageSpeeds() (cellocity.analysis.FlowSpeedAnalysis method) calculateCorrelationAllFrames() (cellocity.analysis.FiveSigmaAnalysis method) calculateCorrelationOneFrame() (cellocity.analysis.FiveSigmaAnalysis method) calculateHistograms() (cellocity.analysis.FlowSpeedAnalysis method) calculateIops() (cellocity.analysis.IopAnalysis method) calculateSpeeds() (cellocity.analysis.FlowSpeedAnalysis method)

cellocity (module) cellocity.analysis (module) cellocity.channel (module) cellocity.validation (module) Channel (class in cellocity.channel) combine_lcorr_and_process_time_to_df() (in module cellocity.validation) convertChannel() (in module cellocity.validation) convertMedianChannel() (in module cellocity.validation)

D

doFarenbackFlow() (cellocity.analysis.FarenbackAnalyzer method) doFrameIntervalSanityCheck() (cellocity.channel.Channel method)

doOpenPIV() (cellocity.analysis.OpenPivAnalyzer method) draw_all_flow_frames() (cellocity.analysis.FlowAnalysis method) draw_all_flow_frames_superimposed() (cellocity.analysis.FlowAnalysis method)

F

FarenbackAnalyzer (class in cellocity.analysis) FiveSigmaAnalysis (class in cellocity.analysis) fixFrameInterval() (cellocity.channel.Channel method)

FlowAnalysis (class in cellocity.analysis) FlowAnalyzer (class in cellocity.analysis) FlowSpeedAnalysis (class in cellocity.analysis)

G

get_data_as_df() (in module cellocity.validation) get_flow_shape() (cellocity.analysis.FlowAnalyzer method) get_pixel_size() (cellocity.analysis.FlowAnalyzer method) get_u_array() (cellocity.analysis.FlowAnalyzer method) get_v_array() (cellocity.analysis.FlowAnalyzer method) getActualFrameIntevals_ms() (cellocity.channel.Channel method) getAnalyzer() (cellocity.analysis.Analysis method) getArray() (cellocity.channel.Channel method) getAvgAlignIdxAsDf() (cellocity.analysis.AlignmentIndexAnalysis method) getAvgAlignIdxs() (cellocity.analysis.AlignmentIndexAnalysis method) getAvgSpeeds() (cellocity.analysis.FlowSpeedAnalysis method) getAvgSpeedsAsDf() (cellocity.analysis.FlowSpeedAnalysis method)

getChannelName() (cellocity.analysis.Analysis method) getCorrelationLengths() (cellocity.analysis.FiveSigmaAnalysis method) getCorrelationLengthsAsDf() (cellocity.analysis.FiveSigmaAnalysis method) getElapsedTimes_ms() (cellocity.channel.Channel method) getIntendedFrameInterval_ms() (cellocity.channel.Channel method) getIops() (cellocity.analysis.IopAnalysis method) getIopsAsDf() (cellocity.analysis.IopAnalysis method) getPages() (cellocity.channel.Channel method) getProgress() (cellocity.analysis.Analyzer method) getSpeeds() (cellocity.analysis.FlowSpeedAnalysis method) getTemporalMedianChannel() (cellocity.channel.Channel method) getTemporalMedianFilter() (cellocity.channel.MedianChannel method) getTiffFile() (cellocity.channel.Channel method)

I

IopAnalysis (class in cellocity.analysis)

M

make_ai_plot() (in module cellocity.validation) make_channels() (in module cellocity.validation) make_fb_flow_analyzer() (in module cellocity.validation) make_iop_plot() (in module cellocity.validation) make_lcorr_plot() (in module cellocity.validation)

make_lcorr_proces_time_plot() (in module cellocity.validation) make_piv_analyzer() (in module cellocity.validation) make_proces_time_plot() (in module cellocity.validation) make_speed_plot() (in module cellocity.validation) MedianChannel (class in cellocity.channel)

N

normalization_to_8bit() (in module cellocity.channel)

O

OpenPivAnalyzer (class in cellocity.analysis)

P

processAndMakeDf() (in module cellocity.validation)

R

rehape3DArrayTo6D() (in module cellocity.channel) resetProgress() (cellocity.analysis.Analyzer method)

reshape6DArrayTo3D() (in module cellocity.channel) run_5sigma_validation() (in module cellocity.validation) run_base_validation() (in module cellocity.validation)

S

saveArrayAsTif() (cellocity.analysis.AlignmentIndexAnalysis method) (cellocity.analysis.FlowSpeedAnalysis method) saveCSV() (cellocity.analysis.AlignmentIndexAnalysis method) (cellocity.analysis.FiveSigmaAnalysis method) (cellocity.analysis.FlowSpeedAnalysis method) (cellocity.analysis.IopAnalysis method)

saveFlowAsTif() (cellocity.analysis.FlowAnalysis method)

T

trim() (cellocity.channel.Channel method)

U

updateProgress() (cellocity.analysis.Analyzer method)